Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs2040040 chr1:114331645 A/T 6.0E-5 111 13.1 20.3 5.1 KM Plot
LAML rs2053999 chr2:3207693 C/T 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs2057223 chr6:127637374 T/C 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs2074860 chr19:2244072 A/G 0.000164 111 16.23 12.65 0.5 KM Plot
LAML rs2091224 chr7:64454022 A/G 9.06E-5 111 1.03 14.67 19.8 KM Plot
LAML rs2112844 chr19:12548494 C/T 1.87E-5 111 6.13 22.37 13.1 KM Plot
LAML rs2144742 chr6:127595786 C/A 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs2144743 chr6:127633810 A/T 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs2149649 chr14:90774974 A/G 2.15E-6 111 1.03 21.27 12.7 KM Plot
LAML rs2167963 chr2:3219529 G/A 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs2168044 chr2:39206386 G/A 0.000136 111 0 4.52 16.27 KM Plot
LAML rs2180341 chr6:127600630 C/T 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs2236402 chr14:90734378 C/G 5.86E-6 111 12.7 21.27 1.03 KM Plot
LAML rs2240480 chr2:242408219 G/A 8.12E-5 109 1.53 14.63 17.23 KM Plot
LAML rs2241399 chr19:16236004 T/G 9.99E-5 107 16.2 8.13 0 KM Plot